| | Pos | No | Class | C. P. | Team | Type | Best Time | Gap | | Ave. km/h | Driver 1 | B Time | Lap | Driver 2 | B Time | Lap | Driver 3 | B Time | Lap |
| | 1 | 18 | LMP2 | 1 | KCMG | MORGAN-NISSAN | 1'33.917 | | | 174.908 | James WINSLOW | 1'37.164 | 10 / 11 | Hiroshi KOIZUMI | 1'35.589 | 4 / 11 | Richard BRADLEY | 1'33.917 | 6 / 7 |
| | 2 | 24 | | 2 | OAK RACING | MORGAN-JUDD | 1'35.848 | 1.931 | 1.931 | 171.384 | Cong Fu CHENG | 1'35.848 | 7 / 7 | David CHENG | 1'39.066 | 10 / 12 | David CHENG | 1'38.618 | 9 / 12 |
| | 3 | 61 | SGT | 1 | R&D SPORT | SUBARU BRZ GT300 | 1'39.049 | 5.132 | 3.201 | 165.845 | Tetsuya YAMANO | 1'39.049 | 8 / 13 | Kota SASAKI | 1'39.332 | 10 / 10 | | | |
| | 4 | 2 | | 2 | Cars Tokai Dream28 | MCLAREN MP4-12C GT3 | 1'39.116 | 5.199 | 0.067 | 165.733 | Kazuho TAKAHASHI | 1'41.140 | 11 / 14 | Hiroki KATOH | 1'39.116 | 9 / 11 | | | |
| | 5 | 11 | | 3 | GAINER | MERCEDES-BENZ SLS AMG GT3 | 1'39.200 | 5.283 | 0.084 | 165.593 | Katsuyuki HIRANAKA | 1'39.200 | 9 / 15 | Bjorn Wirdheim | 1'40.026 | 11 / 11 | | | |
| | 6 | 16 | | 4 | TEAM MUGEN | HONDA CR-Z (ZF-2) | 1'39.256 | 5.339 | 0.056 | 165.499 | Hideki MUTOH | 1'39.256 | 15 / 24 | Yuhki NAKAYAMA | | | | | |
| | 7 | 62 | | 5 | LEON RACING | MERCEDES-BENZ SLS AMG GT3 | 1'39.984 | 6.067 | 0.728 | 164.294 | Haruki KUROSAWA | 1'39.984 | 3 / 13 | Tsubasa KUROSAWA | 1'41.749 | 10 / 13 | | | |
| | 8 | 0 | | 6 | Team TAISAN KEN ENDLESS | PORSCHE 911 GT3 R (997) | 1'40.237 | 6.320 | 0.253 | 163.880 | Kyosuke MINEO | 1'40.922 | 7 / 10 | Naoki YOKOMIZO | 1'40.237 | 2 / 9 | | | |
| | 9 | 77 | GTC | 1 | AF CORSE | FERRARI 458 GT3 | 1'40.725 | 6.808 | 0.488 | 163.086 | Steve WYATT | | | Michele RUGOLO | 1'41.844 | 6 / 14 | Andrea BERTOLINI | 1'40.725 | 4 / 15 |
| | 10 | 52 | SGT | 7 | OKINAWA-IMP RACING with SHIFT | MERCEDES-BENZ SLS AMG GT3 | 1'40.896 | 6.979 | 0.171 | 162.809 | Hironori TAKEUCHI | 1'41.016 | 4 / 7 | Takeshi TSUCHIYA | 1'40.896 | 2 / 4 | Motoyoshi Yoshida | 1'43.620 | 5 / 10 |
| | 11 | 30 | | 8 | apr | NISSAN GT-R NISMO GT3(R35) | 1'40.951 | 7.034 | 0.055 | 162.721 | Yuki IWASAKI | 1'40.951 | 15 / 15 | Igor SUSHKO | 1'41.336 | 4 / 7 | Kenji KOBAYASHI | 1'47.065 | 2 / 3 |
| | 12 | 5 | | 9 | TEAM MACH | NISSAN GT-R NISMO GT3(R35) | 1'40.991 | 7.074 | 0.040 | 162.656 | Tetsuji TAMANAKA | 1'40.991 | 6 / 11 | Naoya Yamano | 1'41.001 | 4 / 12 | | | |
| | 13 | 007 | GTC | 2 | CRAFT RACING | ASTON MARTIN VANTAGE GT3 | 1'41.105 | 7.188 | 0.114 | 162.473 | Frank YU | 1'43.695 | 7 / 8 | Richard LYONS | 1'41.105 | 16 / 16 | | | |
| | 14 | 9 | | 3 | PACIFIC DIRECTION RACING | PORSCHE 911 GT3 R (997) | 1'42.259 | 8.342 | 1.154 | 160.639 | Yuya SAKAMOTO | 1'42.259 | 4 / 17 | You YOKOMAKU | 1'46.174 | 6 / 9 | Akira Mizutani | | |
| | 15 | 91 | | 4 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 1'42.284 | 8.367 | 0.025 | 160.600 | Tatsuya TANIGAWA | 1'42.925 | 5 / 5 | Marco SEEFRIED | 1'42.284 | 10 / 12 | Jun San CHEN | 1'44.898 | 4 / 6 |
| | 16 | 92 | | 5 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 1'42.580 | 8.663 | 0.296 | 160.136 | Yasu KIKUCHI | 1'42.580 | 8 / 10 | Morris CHEN | 1'46.610 | 5 / 18 | | | |
| | 17 | 70 | GTE | 1 | TAISAN KEN ENDLESS | FERRARI 458 GTE | 1'42.989 | 9.072 | 0.409 | 159.501 | Akira IIDA | | | Shinji NAKANO | 1'42.989 | 10 / 11 | Shogo MITSUYAMA | 1'43.406 | 6 / 11 |
| | 18 | 37 | GTC | 6 | BBT | LAMBORGHINI GALLARDO GT3 | 1'43.396 | 9.479 | 0.407 | 158.873 | Anthony LIU | 1'43.396 | 13 / 16 | Davide RIZZO | | | Massimiliano WISER | | |
| | 19 | 26 | | 7 | Team TAISAN KEN ENDLESS | PORSCHE 996 GT300 | 1'44.822 | 10.905 | 1.426 | 156.711 | Akihiro ASAI | 1'45.826 | 7 / 11 | Naoya GAMOU | 1'44.822 | 6 / 8 | | | |
| | 20 | 55 | SGT | 10 | AUTOBACS RACING TEAM AGURI | HONDA CR-Z (ZF-2) | | | | | Shinichi TAKAGI | | | Takashi KOBAYASHI | | | Tomoki NOJIRI | | |