| | Pos | No | Class | C.P. | Team | Type | Lap | Total Time | Gap | Ave. km/h | Driver 1 | Lap | B Time | Driver 2 | Lap | B Time | Driver 3 | Lap | B Time |
| | | | | | | | | | | | | | | | | | | | |
| | 1 | 18 | LMP2 | 1 | KCMG | MORGAN-NISSAN | 72 | 2:01'31.054 | | 162.066 | James WINSLOW | 34 | 1'36.455 | Hiroshi KOIZUMI | 32 | 1'36.251 | Richard BRADLEY | 6 | 1'36.470 |
| | 2 | 24 | | 2 | OAK RACING | MORGAN-JUDD | 71 | 2:01'06.019 | 1Lap | 160.364 | Cong Fu CHENG | 16 | 1'35.843 | David CHENG | 28 | 1'39.107 | Jeffrey LEE | 27 | 1'39.511 |
| | 3 | 16 | SGT | 1 | TEAM MUGEN | HONDA CR-Z (ZF-2) | 71 | 2:01'39.555 | 1Lap | 159.627 | Hideki MUTOH | 37 | 1'40.101 | Yuhki NAKAYAMA | 34 | 1'40.190 | | | |
| | 4 | 11 | | 2 | GAINER | MERCEDES-BENZ SLS AMG GT3 | 71 | 2:01'43.758 | 1Lap | 159.535 | Katsuyuki HIRANAKA | 36 | 1'40.616 | Bjorn WIRDHEIM | 35 | 1'40.102 | | | |
| | 5 | 61 | | 3 | R&D SPORT | SUBARU BRZ GT300 | 70 | 2:01'07.852 | 2Laps | 158.063 | Tetsuya YAMANO | 37 | 1'40.123 | Kota SASAKI | 33 | 1'39.814 | | | |
| | 6 | 2 | | 4 | Cars Tokai Dream28 | MCLAREN MP4-12C GT3 | 69 | 2:01'29.435 | 3Laps | 155.342 | Kazuho TAKAHASHI | 14 | 1'42.203 | Hiroki KATOH | 55 | 1'41.438 | | | |
| | 7 | 0 | | 5 | Team TAISAN KEN ENDLESS | PORSCHE 911 GT3 R (997) | 69 | 2:01'29.609 | 3Laps | 155.338 | Kyosuke MINEO | 40 | 1'41.520 | Naoki YOKOMIZO | 29 | 1'41.473 | | | |
| | 8 | 5 | | 6 | TEAM MACH | NISSAN GT-R NISMO GT3(R35) | 68 | 2:00'25.623 | 4Laps | 154.440 | Tetsuji TAMANAKA | 31 | 1'41.885 | Naoya YAMANO | 37 | 1'40.127 | | | |
| | 9 | 52 | | 7 | OKINAWA-IMP RACING with SHIFT | MERCEDES-BENZ SLS AMG GT3 | 68 | 2:00'26.353 | 4Laps | 154.425 | Hironori TAKEUCHI | 47 | 1'42.279 | Takeshi TSUCHIYA | 21 | 1'42.567 | Motoyoshi YASHIDA | | |
| | 10 | 007 | GTC | 1 | CRAFT RACING | ASTON MARTIN VANTAGE GT3 | 68 | 2:01'17.701 | 4Laps | 153.335 | Frank YU | 29 | 1'43.939 | Richard LYONS | 39 | 1'41.399 | | | |
| | 11 | 77 | | 2 | AF CORSE | FERRARI 458 GT3 | 68 | 2:01'19.967 | 4Laps | 153.288 | Steve WYATT | 29 | 1'43.660 | Michele RUGOLO | 37 | 1'41.675 | Andrea BERTOLINI | 2 | 1'43.260 |
| | 12 | 70 | GTE | 1 | TAISAN KEN ENDLESS | FERRARI 458 GTE | 68 | 2:01'24.770 | 4Laps | 153.186 | Akira IIDA | 36 | 1'43.243 | Shinji NAKANO | | | Shogo MITSUYAMA | 32 | 1'43.134 |
| | 13 | 9 | GTC | 3 | PACIFIC DIRECTION RACING | PORSCHE 911 GT3 R (997) | 67 | 2:00'21.567 | 5Laps | 152.252 | Yuya SAKAMOTO | 40 | 1'43.826 | You YOKOMAKU | 27 | 1'44.402 | Akira MIZUTANI | | |
| | 14 | 37 | | 4 | BBT | LAMBORGHINI GALLARDO GT3 | 66 | 2:00'28.575 | 6Laps | 149.832 | Anthony LIU | 31 | 1'43.661 | Davide RIZZO | 6 | 1'43.375 | Massimiliano WISER | 29 | 1'43.526 |
| | 15 | 26 | | 5 | Team TAISAN KEN ENDLESS | PORSCHE 996 GT300 | 66 | 2:00'51.884 | 6Laps | 149.351 | Akihiro ASAI | 13 | 1'46.853 | Naoya GAMOU | 53 | 1'45.428 | | | |
| | 16 | 91 | | 6 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 64 | 1:58'27.169 | 8Laps | 147.769 | Tatsuya TANIGAWA | 34 | 1'42.402 | Marco SEEFRIED | | | Jun San CHEN | 30 | 1'44.129 |
| | 17 | 92 | | 7 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 62 | 2:00'57.481 | 10Laps | 140.182 | Yasu KIKUCHI | 27 | 1'43.591 | Morris CHEN | 35 | 1'46.357 | | | |
| | 18 | 62 | SGT | 8 | LEON RACING | MERCEDES-BENZ SLS AMG GT3 | 50 | 2:01'47.027 | 22Laps | 112.254 | Haruki KUROSAWA | 50 | 1'40.835 | Tsubasa KUROSAWA | | | | | |
| | 19 | 30 | | 9 | apr | NISSAN GT-R NISMO GT3(R35) | 44 | 1:18'07.668 | 28Laps | 153.954 | Yuki IWASAKI | 27 | 1'41.396 | Igor SUSHKO | 17 | 1'41.514 | Kenji KOBAYASHI | | |
| | 20 | 55 | | 10 | AUTOBACS RACING TEAM AGURI | HONDA CR-Z (ZF-2) | 34 | 1:00'38.279 | 38Laps | 153.209 | Shinichi TAKAGI | 34 | 1'40.342 | Takashi KOBAYASHI | | | Tomoki NOJIRI | | |