| | Pos | No | Team | Type | Lap | Total Time | Gap | Ave. km/h | Driver 1 | Lap | B Time | Driver 2 | Lap | B Time | Driver 3 | Lap | B Time |
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| LMP2 | | | | | | | | | | | | | | | | | |
| | 1 | 18 | KCMG | MORGAN-NISSAN | 36 | 1:01'22.513 | | 160.290 | James WINSLOW | 4 | 1'38.781 | Hiroshi KOIZUMI | 32 | 1'36.251 | Richard BRADLEY | | |
| | 2 | 24 | OAK RACING | MORGAN-JUDD | 36 | 1:01'55.020 | 32.507 | 158.888 | Cong Fu CHENG | | | David CHENG | 9 | 1'39.777 | Jeffrey LEE | 27 | 1'39.511 |
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| GTE | | | | | | | | | | | | | | | | | |
| | 1 | 70 | TAISAN KEN ENDLESS | FERRARI 458 GTE | 35 | 1:01'10.646 | | 156.333 | Akira IIDA | 35 | 1'43.243 | Shinji NAKANO | | | Shogo MITSUYAMA | | |
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| GTC | | | | | | | | | | | | | | | | | |
| | 1 | 9 | PACIFIC DIRECTION RACING | PORSCHE 911 GT3 R (997) | 35 | 1:01'45.815 | | 154.850 | Yuya SAKAMOTO | 35 | 1'43.826 | You YOKOMAKU | | | Akira MIZUTANI | | |
| | 2 | 007 | CRAFT RACING | ASTON MARTIN VANTAGE GT3 | 35 | 1:02'01.534 | 15.719 | 154.195 | Frank YU | 1 | 3'34.145 | Richard LYONS | 34 | 1'41.576 | | | |
| | 3 | 26 | Team TAISAN KEN ENDLESS | PORSCHE 996 GT300 | 35 | 1:02'19.635 | 33.820 | 153.449 | Akihiro ASAI | | | Naoya GAMOU | 35 | 1'45.428 | | | |
| | 4 | 77 | AF CORSE | FERRARI 458 GT3 | 34 | 1:01'30.236 | 1Lap | 151.052 | Steve WYATT | 29 | 1'43.660 | Michele RUGOLO | 5 | 1'41.841 | Andrea BERTOLINI | | |
| | 5 | 91 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 34 | 1:01'54.816 | 1Lap | 150.052 | Tatsuya TANIGAWA | 34 | 1'42.402 | Marco SEEFRIED | | | Jun San CHEN | | |
| | 6 | 37 | BBT | LAMBORGHINI GALLARDO GT3 | 34 | 1:02'09.964 | 1Lap | 149.443 | Anthony LIU | 5 | 1'44.077 | Davide RIZZO | | | Massimiliano WISER | 29 | 1'43.526 |
| | 7 | 92 | AAI-RSTRADA | MCLAREN MP4-12C GT3 | 33 | 1:02'27.469 | 2Laps | 144.361 | Yasu KIKUCHI | 25 | 1'43.591 | Morris CHEN | 8 | 1'48.077 | | | |
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| SGT | | | | | | | | | | | | | | | | | |
| | 1 | 16 | TEAM MUGEN | HONDA CR-Z (ZF-2) | 36 | 1:00'49.914 | | 161.722 | Hideki MUTOH | 36 | 1'40.101 | Yuhki NAKAYAMA | | | | | |
| | 2 | 11 | GAINER | MERCEDES-BENZ SLS AMG GT3 | 36 | 1:01'00.019 | 10.105 | 161.275 | Katsuyuki HIRANAKA | 36 | 1'40.616 | Bjorn WIRDHEIM | | | | | |
| | 3 | 52 | OKINAWA-IMP RACING with SHIFT | MERCEDES-BENZ SLS AMG GT3 | 36 | 1:02'04.520 | 14.606 | 158.482 | Hironori TAKEUCHI | 36 | 1'42.279 | Takeshi TSUCHIYA | | | Motoyoshi YASHIDA | | |
| | 4 | 61 | R&D SPORT | SUBARU BRZ GT300 | 35 | 1:01'22.941 | 1Lap | 155.811 | Tetsuya YAMANO | 2 | 1'42.735 | Kota SASAKI | 33 | 1'39.814 | | | |
| | 5 | 2 | Cars Tokai Dream28 | MCLAREN MP4-12C GT3 | 35 | 1:01'32.240 | 1Lap | 155.419 | Kazuho TAKAHASHI | | | Hiroki KATOH | 35 | 1'41.438 | | | |
| | 6 | 5 | TEAM MACH | NISSAN GT-R NISMO GT3(R35) | 35 | 1:01'33.047 | 1Lap | 155.385 | Tetsuji TAMANAKA | | | Naoya YAMANO | 35 | 1'40.127 | | | |
| | 7 | 0 | Team TAISAN KEN ENDLESS | PORSCHE 911 GT3 R (997) | 35 | 1:01'35.178 | 1Lap | 155.295 | Kyosuke MINEO | 11 | 1'41.520 | Naoki YOKOMIZO | 24 | 1'41.473 | | | |
| | 8 | 55 | AUTOBACS RACING TEAM AGURI | HONDA CR-Z (ZF-2) | 34 | 1:00'38.279 | 2Laps | 153.209 | Shinichi TAKAGI | 34 | 1'40.342 | Takashi KOBAYASHI | | | Tomoki NOJIRI | | |
| | 9 | 30 | apr | NISSAN GT-R NISMO GT3(R35) | 34 | 1:00'55.310 | 2Laps | 152.495 | Yuki IWASAKI | 27 | 1'41.396 | Igor SUSHKO | 7 | 1'41.514 | Kenji KOBAYASHI | | |
| | 10 | 62 | LEON RACING | MERCEDES-BENZ SLS AMG GT3 | 24 | 55'13.107 | 12Laps | 118.665 | Haruki KUROSAWA | 24 | 1'41.293 | Tsubasa KUROSAWA | | | | | |